A generalized operational formula based on total electronic densities to obtain 3D pictures of the dual descriptor to reveal nucleophilic and electrophilic sites accurately on closed-shell molecules

Indexación: Wiley Online Library. Online Version of Record published before inclusion in an issue http://onlinelibrary.wiley.com/doi/10.1002/jcc.24453/fullBy means of the conceptual density functional theory, the so-called dual descriptor (DD) has been adapted to be used in any closed-shell molecule that presents degeneracy in its frontier molecular orbitals. The latter is of paramount importance because a correct description of local reactivity will allow to predict the most favorable sites on a molecule to undergo nucleophilic or electrophilic attacks; on the contrary, an incomplete description of local reactivity might have serio us consequences, particularly for those experimental chemists that have the need of getting an insight about reactivity of chemical reagents before using them in synthesis to obtain a new compound. In the present work, the old approach based only on electronic densities of frontier molecular orbitals is replaced by the most accurate procedure that implies the use of total electronic densities thus keeping consistency with the essential principle of the DFT in which the electronic density is the fundamental variable and not the molecular orbitals. As a result of the present work, the DD will be able to properly describe local reactivities only in terms of total electronic densities. To test the proposed operational formula, 12 very common molecules were selected as the original definition of the DD was not able to describe their local reactivities properly. The ethylene molecule was additionally used to test the capability of the proposed operational formula to reveal a correct local reactivity even in absence of degeneracy in frontier molecular orbitals.http://onlinelibrary.wiley.com/doi/10.1002/jcc.24453/ful

Wobbling of a liquid column between unequal discs

One of the most puzzling results of an experiment on the stability of long liquid columns under microgravity, performed aboard Spacelab-D2 in 1993 and named STACO, aiming at the analysis of deformations of nearly cylindrical liquid columns under several mechanical disturbances, is revisited here. It corresponds to the unexplained breakage of an 85 mm long liquid bridge of low viscosity silicone oil, established between unequal discs of 30 and 28 mm, intended to counterbalance the expected deformation by residual acceleration found in previous flights, and left idle because the vibrations and oscillations to be applied afterwards were not started, for fear of premature breakage. A detailed image analysis is performed to extract the maximum amount of data, to be able to check against available theories for axisymmetric and non-axisymmetric deformations of a liquid column

Effect of van der Waals forces on the stacking of coronenes encapsulated in a single-wall carbon nanotube and many-body excitation spectrum

We investigate the geometry, stability, electronic structure and optical properties of C24H12 coronenes encapsulated in a single-wall (19,0) carbon nanotube. By an adequate combination of advanced electronic-structure techniques, involving weak and van derWaals interaction, as well as many-body effects for establishing electronic properties and excitations, we have accurately characterized this hybrid carbon nanostructure, which arises as a promising candidate for opto-electronic nanodevices. In particular, we show that the structure of the stacked coronenes inside the nanotube is characterized by a rotation of every coronene with respect to its neighbors through van derWaals interaction, which is of paramount importance in these systems. We also suggest a tentative modification of the system in order this particular rotation to be observed experimentally. A comparison between the calculated many-body excitation spectrum of the systems involved reveals a pronounced optical red-shift with respect to the coronene-stacking gas-phase. The origin of this red-shift is explained in terms of the confinement of the coronene molecules inside the nanotube, showing an excellent agreement with the available experimental evidence

Energy Level Alignment in Organic-Organic Heterojunctions: The TTF-TCNQ Interface

The energy level alignment of the two organic materials forming the TTF-TCNQ interface is analyzed by means of a local orbital DFT calculation, including an appropriate correction for the transport energy gaps associated with both materials. These energy gaps are determined by a combination of some experimental data and the results of our calculations for the difference between the TTF_{HOMO} and the TCNQ_{LUMO} levels. We find that the interface is metallic, as predicted by recent experiments, due to the overlap (and charge transfer) between the Density of States corresponding to these two levels, indicating that the main mechanism controlling the TTF-TCNQ energy level alignment is the charge transfer between the two materials. We find an induced interface dipole of 0.7 eV in good agreement with the experimental evidence. We have also analyzed the electronic properties of the TTF-TCNQ interface as a function of an external bias voltage \Delta, between the TCNQ and TTF crystals, finding a transition between metallic and insulator behavior for \Delta~0.5 eV

Surface Percolation and Growth. An alternative scheme for breaking the diffraction limit in optical patterning

A nanopatterning scheme is presented by which the structure height can be controlled in the tens of nanometers range and the lateral resolution is a factor at least three times better than the point spread function of the writing beam. The method relies on the initiation of the polymerization mediated by a very inefficient energy transfer from a fluorescent dye molecule after single photon absorption. The mechanism has the following distinctive steps: the dye adsorbs on the substrate surface with a higher concentration than in the bulk, upon illumination it triggers the polymerization, then isolated islands develop and merge into a uniform structure (percolation), which subsequently grows until the illumination is interrupted. This percolation mechanism has a threshold that introduces the needed nonlinearity for the fabrication of structures beyond the diffraction limit.Comment: 10 pages, 8 figure

Three-Dimensional Wave Packet Approach for the Quantum Transport of Atoms through Nanoporous Membranes

Quantum phenomena are relevant to the transport of light atoms and molecules through nanoporous two-dimensional (2D) membranes. Indeed, confinement provided by (sub-)nanometer pores enhances quantum effects such as tunneling and zero point energy (ZPE), even leading to quantum sieving of different isotopes of a given element. However, these features are not always taken into account in approaches where classical theories or approximate quantum models are preferred. In this work we present an exact three-dimensional wave packet propagation treatment for simulating the passage of atoms through periodic 2D membranes. Calculations are reported for the transmission of $^3$He and $^4$He through graphdiyne as well as through a holey graphene model. For He-graphdiyne, estimations based on tunneling-corrected transition state theory are correct: both tunneling and ZPE effects are very important but competition between each other leads to a moderately small $^4$He/$^3$He selectivity. Thus, formulations that neglect one or another quantum effect are inappropriate. For the transport of He isotopes through leaky graphene, the computed transmission probabilities are highly structured suggesting widespread selective adsorption resonances and the resulting rate coefficients and selectivity ratios are not in agreement with predictions from transition state theory. Present approach serves as a benchmark for studies of the range of validity of more approximate methods.Comment: 4 figure